Type of multiple testing correction to be used Įither "dpBF" (depth-wise Bonferroni multiple adjustment) or "none" Well if the argument is set to FALSE which is the default option. Increase when going down some given branch. The significant level at which the FWER is controlled.Ī logical value indicating whether the global test shouldĪ logical value indicating whether the p-values can only Multiple group tests but the cache can be updated while testing. The hierarchical testing procedure and its purpose is to serve as aĬache or memory if some output does not have to be recalculated for The hierarchical testing procedure and its output is passed on to eachĬall of test.func. See the 'Details' section.Ī vector or list with arguments which is passed on toĪ function which is called once at the beginning of See the 'Details'Ī matrix or list of matrices of control variables.Ī list with arguments which is passed on toĮach call of the functions inputted to the arguments test.func,ĬompMOD.same, and compMOD.changing.
The vector, vectors, matrix, or matricesĪ test function for groups of variables. The rows and the columns represent the observations andĪ vector, a matrix with one column, or list of the aforementioned Matrices have to be of type numeric and are required to have column names ) NULL, alpha = 0.05, global.test = TRUE, hier.adj = FALSE, mt.adj = c ( "dpBF", "none" ), agg.method = c ( "Tippett", "Stouffer" ), verbose = FALSE, sort.parallel = TRUE, parallel = c ( "no", "multicore", "snow" ), ncpus = 1L, cl = NULL )Ī matrix or list of matrices for multiple data sets. Run_hierarchy ( x, y, dendr, test.func, clvar = NULL, arg.all = list ( NULL ), = NULL, compMOD.same = function (.
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